Tender

Miscanspeed sequencing procurement

  • Aberystwyth University

F02: Contract notice

Notice identifier: 2022/S 000-015181

Procurement identifier (OCID): ocds-h6vhtk-0341f3

Published 31 May 2022, 11:58am



Section one: Contracting authority

one.1) Name and addresses

Aberystwyth University

c/o Finance Office, Student Welcome Centre, Penglais Campus

Aberystwyth

SY23 3FB

Email

pad47@aber.ac.uk

Telephone

+44 1970628716

Country

United Kingdom

NUTS code

UKL1 - West Wales and the Valleys

Internet address(es)

Main address

http://www.aber.ac.uk

one.3) Communication

The procurement documents are available for unrestricted and full direct access, free of charge, at

https://etenderwales.bravosolution.co.uk/

Additional information can be obtained from the above-mentioned address

Tenders or requests to participate must be submitted electronically via

https://etenderwales.bravosolution.co.uk/

one.4) Type of the contracting authority

Other type

University

one.5) Main activity

Education


Section two: Object

two.1) Scope of the procurement

two.1.1) Title

Miscanspeed sequencing procurement

two.1.2) Main CPV code

  • 33696500 - Laboratory reagents

two.1.3) Type of contract

Supplies

two.1.4) Short description

Researchers at IBERS, Aberystwyth University are undertaking a 3 year project to implement genomic selection (GS) in the perennial energy crop Miscanthus. The project is to establish genomic selection in 2 Miscanthus recurrent selection pools (M.sinensis and M.sacchariflorus). We need a rapid, high throughput genomic marker system to enable selections in time to make crosses within the same season in order to generate the subsequent generation.

two.1.5) Estimated total value

Value excluding VAT: £300,000

two.1.6) Information about lots

This contract is divided into lots: No

two.2) Description

two.2.3) Place of performance

NUTS codes
  • UKL1 - West Wales and the Valleys
Main site or place of performance

Aberystwyth

two.2.4) Description of the procurement

The projects has 2 phases:

Phase 1. Training Set & parents: 111 diploid M. sinensis, 341 tetraploid M.sacchariflorus

Phase 2: Progeny screening: Approx. 1000 progeny per species, per year. Max. 2000 per year, 6000 total over 3 years.

Phase 1.

Leaf samples will be taken from mature plants in July 2022.

A.Genomic DNA will be extracted from leaf samples. We will prepare DNA in-house if necessary, but we would prefer all processing to be done by the company if at all possible.

B.The company will process and sequence the DNA samples

C.The company will generate genomic (SNP) markers (genotype calls rather than NGS sequence tags that then have to be mined for SNPs).

Phase 2:

Samples will be taken from the seedlings in Feb/March of 2023, 2024 and 2025.

A. Genomic DNA will be extracted from leaf samples. We will prepare DNA in-house if necessary, but we would prefer all processing to be done by the company if at all possible.

B. The company will process and sequence the DNA samples. This may be using the same technology or a modified version in relation to Phase 1.

C. The company will generate genomic (SNP) markers (genotype calls rather than NGS sequence tags that then have to be mined for SNPs).

Markers are required back by May/June at the latest. A rapid and robust process is essential or we will miss a year’s crossing and miss our project targets.

We need the same SNPs for both GS training (Phase 1, 2022) and genotyping the seedlings (Phase 2, 2023-2025).

two.2.5) Award criteria

Quality criterion - Name: Technical / Weighting: 800

Cost criterion - Name: Cost / Weighting: 200

two.2.7) Duration of the contract, framework agreement or dynamic purchasing system

Duration in months

36

This contract is subject to renewal

Yes

Description of renewals

Any work awarded following phase 1 will be by the way of extension options to the original contract

two.2.10) Information about variants

Variants will be accepted: No

two.2.11) Information about options

Options: No

two.2.13) Information about European Union Funds

The procurement is related to a project and/or programme financed by European Union funds: No


Section three. Legal, economic, financial and technical information

three.1) Conditions for participation

three.1.2) Economic and financial standing

Selection criteria as stated in the procurement documents

three.1.3) Technical and professional ability

Selection criteria as stated in the procurement documents


Section four. Procedure

four.1) Description

four.1.1) Type of procedure

Open procedure

four.1.8) Information about the Government Procurement Agreement (GPA)

The procurement is covered by the Government Procurement Agreement: Yes

four.2) Administrative information

four.2.2) Time limit for receipt of tenders or requests to participate

Date

1 July 2022

Local time

2:00pm

four.2.4) Languages in which tenders or requests to participate may be submitted

English, Welsh

four.2.7) Conditions for opening of tenders

Date

1 July 2022

Local time

2:00pm

Place

E-tender Wales

Information about authorised persons and opening procedure

Opening Committee through E-tender Wales


Section six. Complementary information

six.1) Information about recurrence

This is a recurrent procurement: No

six.3) Additional information

NOTE: The authority is using eTenderwales to carry out this procurement process. To obtain further information record your interest on Sell2Wales at https://www.sell2wales.gov.wales/search/search_switch.aspx?ID=121824

(WA Ref:121824)

The buyer considers that this contract is suitable for consortia.

six.4) Procedures for review

six.4.1) Review body

High Court

Royal Courts of Justice, The Strand

London

WC2A 2LL

Telephone

+44 2079477501

Country

United Kingdom