CEFAS26-11 Framework for Next Generation Sequencing Services
- CENTRE FOR ENVIRONMENT, FISHERIES AND AQUACULTURE SCIENCE
Procurement identifier (OCID): ocds-h6vhtk-069850
Description
Cefas are seeking to establish a Framework for the provision of Next-Generation Sequencing (NGS) services, for a variety of NGS analyses methods, to support the delivery of numerous and varied research programmes that are utilising genomics.
The framework is split into 4 Lots and Suppliers can bid for any number of Lots. Cefas intends to award up to 5 Contracts for each Lot, based on Suppliers meeting the required technical and pricing evaluation criteria. Cefas will then call-off from the framework for individual project requirements, as set out in the full Specification of Requirement document in the Bidder Pack. If a Supplier is awarded multiple Lots, one Contract will be awarded to cover the relevant Lots.
The Contract implementation is expected to start in August 2026 for a period of 3 years with the option to extend for 2 further periods of 12 months each.
Prices will be fixed for the initial 3 year period of the Contract. Prices may then be increased on an annual basis if the Contract is extended, in line with CPI.
Lot 1 - Targeted Sequencing
Suppliers will deliver targeted sequencing analyses, such as:
• Amplicon sequencing and metabarcoding, utilising mainly 16S, 18S, COI and ITS markers, but also other custom primers may be required on an ad-hoc basis.
• Library enrichment, such as bait capture/hybrid probe capture techniques.
Lot 2 - Whole Genome
Suppliers will deliver whole genome, metagenomic and transcriptomic sequencing, in applications such as:
• Whole genome/metagenomic sequencing for microbial diversity, microbiome analysis, species identification, pathogen detection, genome assembly, AMR screening, population genetics.
• Transcriptomic/single-cell/spatial transcriptomic sequencing for host-pathogen interactions, functional annotation/classification, metabolic pathways, gene expression.
Lot 3 - Long-Read Sequencing
Suppliers will provide long-read sequencing analysis, using either PacBio or Oxford Nanopore Technologies. This may be for several different applications, mainly studies of:
• Microbial diversity, microbiome analysis, species identification, pathogen detection
• Whole-genome assembly, AMR screening, population genetics
• Nanopore-specific - Methylation sequencing, epigenetics
Lot 4 - Ad-Hoc Requirements
Suppliers will ad-hoc requests, i.e. those that do not fit in the prior lot categories. This would most likely be utilised when a unique/proprietary technology or analysis is required, such as RAD-Seq, that Cefas cannot undertake in-house.
Specifics would be detailed in the individual project request via the call-off process, which will be a mini-competition process as set out in Appendix 4.
AWARDED SUPPLIERS -
Lot 1
Biomarker Technologies
University of Northumbria
University of Exeter
QIB Extra
Edinburgh Genetics
University of Plymouth
Lot 2
Biomarker Technologies
Novogene
University of Exeter
Edinburgh Genetics
QIB Extra
Lot 3
University of Northumbria
University of Exeter
Biomarker Technologies
Edinburgh Genetics
Edinburgh Innovations
Lot 4
Biomarker Technologies
Earlham Institute
Novogene
Source BioScience
**Please note due to system constraints please note that the actual number of assessed tenders for lot 4 was 4***
Notices
UK6: Contract award notice
- Notice identifier
- 2026/S 000-086264
- Published
- 11 September 2026, 10:37am
UK4: Tender notice
- Notice identifier
- 2026/S 000-044189
- Published
- 14 May 2026, 8:23am